Getting Functional Characterization Details
Query VISTA enhancer regions
Returns VISTA enhancer regions with tissues,result and element id
query {
functionalCharacterizationQuery(assembly: "grch38", coordinates: { chromosome: "chr11", start: 5291251, end: 5291587 }) {
tissues
element_id
assay_result
chromosome
stop
start
}
}
Get MPRA Regions
Returns MPRA regions for given genomic region.
query {
mpraFccQuery(coordinates: {
chromosome: "chr11",
start: 5291251,
end: 5291587
}) {
celltype
chromosome
stop
start
assay_type
element_location
series
strand
log2fc
experiment
barcode_location
}
}
Get STARR-seq CAPRA Quantification (solo and double fragments)
Returns STARR-seq CAPRA Quantification (solo fragments) for a single cCRE.
query {
capraFccSoloQuery(accession: ["EH38E2941922"]) {
rdhs
log2fc
fdr
dna_rep1
rna_rep1
rna_rep2
rna_rep3
pvalue
experiment
}
}
Returns STARR-seq CAPRA Quantification (double fragments) for a single cCRE.
query {
capraFccDoubleQuery(accession: ["EH38E2941922"]) {
rdhs_p1
rdhs_p2
log2fc
fdr
dna_rep1
rna_rep1
rna_rep2
rna_rep3
pvalue
experiment
}
}